Stem Cell Commons

Promoting Discovery and Reproducibility in Stem Cell Research

User Top Menu

Search experiments

Code

Fri, 07/27/2012 - 15:51 -- admin
Content name: 
Code Page

All code used by the Stem Cell Commons is freely available.

 

eXframe: https://bitbucket.org/mindinformatics/exframe7

The eXframe software  is a reusable web-based framework that provides structured annotation of experiments and ability to publish structured data compliant with accepted standards such as ISA-Tab.

 

eXframe is based on theDrupal open source content management system.

Drupal and eXframe are both licensed under theGPL version 2 free software license.

 

Copyright (C) 2012  Massachusetts General Hospital (MGH). This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

 

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or  FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more details.

 

You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc. at  51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA.

 

Contact (mail):
MIND Informatics

65 Landsdowne Street, Suite 200, Cambridge, MA 02139

 

Galaxy: https://bitbucket.org/hbc/galaxy-central-hbc

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research. Galaxy source code is licensed under the Academic Free License version 3.0. For more information about copyright and licensing, please visit http://wiki.galaxyproject.org/Admin/License.

 

Refinery:https://github.com/parklab/Refinery

 

The Refinery Platform is a web-based data visualization and analysis system powered by an ISA-Tab-compatible data repository for public and private data sets. Analyses are implemented as Galaxy workflows and executed through the Galaxy API.

 

Copyright (c) 2011-2014 The President and Fellows of Harvard College. All rights reserved. Copyright (c) 2011-2014 Boston Children's Hospital. All rights reserved.

 

 

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the

Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

 

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

 

Except as contained in this notice, the name of Harvard University and Boston Children's Hospital or any affiliate shall not be used in advertising, publicity, news release or otherwise to promote the sale, use or other dealings in this Software without prior written authorization by Harvard University and Boston Children's Hospital.

 

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.