Stem Cell Commons

Promoting Discovery and Reproducibility in Stem Cell Research

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Analyze Page

We are currently developing and integrating the Refinery Platform to enable web-based data analysis and visualization. Refinery is powered by an ISA-Tab-compatible data repository for access to public and private data sets. Analyses are implemented as Galaxy workflows and executed through the Galaxy API.

For an example of Refinery running in “repository mode” (i.e. without access to workflows), visit the Encode-X Browser.

The Stem Cell Commons Refinery analysis platform is now in private beta. Please note that you require a FAS username and password to login to the system.

The video below shows a brief demo of how to browse for a particular experiment, export it to Refinery and assign data for a ChIP-seq analysis. We welcome feedback and suggestions for improving the user interface and invite interested users to contact us for user accounts and training.