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Experiments and Sample Group Count

137 experiments containing 3,057 sample groups.

Organism

  • Danio rerio 50
  • Homo sapiens 113
  • Mus musculus 133
  • Rattus norvegicus 1

Assay Type

  • DNA Methylation Profiling (Bisulfite-Seq) 8
  • DNA Methylation Profiling (MeDIP-Seq) 1
  • DNase-Hypersensitivity (DHS-Seq) 1
  • Histone Modification (ChIP-Seq) 8
  • Protein-RNA Binding (RIP-Seq) 1
  • Transcription Factor Binding (ChIP-Seq) 46
  • Transcription Profiling (Microarray) 172
  • Transcription Profiling (RNA-Seq) 115
  • TRAP Translational Profiling 1
  • Variations 0

Disease State

  • Healthy 1
  • Breast cancer 1
  • Colorectal cancer 1
  • Glioblastoma 1
  • Pancreatic cancer 2
  • Hematopoietic Diseases
    • Preleukemic 1
    • Acute Leukemia
    • Acute Lymphocytic Leukemia (ALL)
    • Acute Myelogenous Leukemia (AML) 19
    • Acute Promyelocytic Leukemia (APL) 4
    • Chronic Lymphocytic Leukemia (CLL)
    • Chronic Myelogenous Leukemia (CML)
    • Hairy Cell Leukemia (HCL)
    • Myelodysplastic Syndrome (MDS) 1
    • Myeloid Leukemia 3
  • Melanomas
    • Malignant Melanoma 1
    • Melanoma 1
    • Metastatic Melanoma 1
  • Other
    • Amyotrophic Lateral Sclerosis 1
    • Adenocarcinoma
      • Colorectal adenocarcinoma
      • Ovarian Adenocarcinoma 1
    • Li-Fraumeni Syndrome
    • Cancer
    • Glioma 2
    • Hepatocellular Carcinoma 2
    • Neuro 2a neuroblastoma 1
    • Primitive Neuroectodermal Tumor (PNET) 1
  • None 18

Cell Type

  • CD133+ expanded umbilical cord blood (UCB) cells 1
  • HL-1 (murine cardiac muscle cell line) 1
  • Intestinal villus 1
  • Cell lines 1
    • 32D 1
    • 38B9 (murine pro-B cell line) 2
    • 3T3 1
    • AGS 1
    • BG03 (human embryonic stem cell line) 1
    • BJ fibroblast 0
    • BPLER 0
    • C2 (murine embryonic stem cell line) 1
    • C2C12 (murine myoblast cell line) 4
    • Caco-2 3
    • Caco-2 BBe 1
    • D3 (murine embryonic stem cell line) 1
    • D4 (murine embryonic stem cell line) 1
    • E14Tg2A (murine embryonic stem cell line) 1
    • FM95-14 1
    • G1E (GATA-1 null erythroblast) 1
    • Kasumi-1 1
    • Lgr5(hi) stem cells 1
    • MEF (murine embyronic fibroblast) 2
    • NB508 (murine pancreatic cell line) 1
    • NCI-H1819 1
    • NCI-H2087 1
    • NCI-H3122 1
    • V6.5 mESC (murine embryonic stem cell line) 3
    • G1ER (estrogen inducible GATA-1 null erythroblast) 1
    • G1E-ER4 1
    • Jurkat 2
      • Jurkat E6-1 1
    • H1 4
      • dH1f 1
    • K562 10
    • K562-C/EBPa 1
    • H9 3
    • KBM-7 1
    • HeLa 2
    • KBM7_LiPS 1
    • HL60 4
    • Lips1 2
    • HuG-1 2
    • Lips3 2
    • IMR-90 1
    • Loucy 1
    • LN18 1
    • LN229 1
    • LS174T 1
    • MEL (mouse erythroleukemia cell) 1
      • MEL86 1
    • MM1.S 2
    • M-O7e 1
    • P19 1
    • PG13 1
    • R1 1
    • SNU-398 1
    • U87 1
    • U937 4
  • Bone & cartilage 0
    • Osteoblast 2
      • Non-terminally differentiated osteoblast 0
    • Mesenchymal cell 1
      • Mesenchymal stem cell 0
    • Chondroblast 1
    • Chondrocyte progenitor 1
    • Fibroblast 13
      • MEF (murine embyronic fibroblast) 2
  • Brain 1
    • Astrocyte 2
    • Neural cell 3
    • Neurospheres 2
    • Neural precursor cell 4
    • Neuronal stem cell 4
  • Breast 0
    • Mammosphere 1
    • Mammary gland 1
      • Luminal epithelial cell of mammary gland 1
      • Mammary gland tumor cell 1
      • Myoepithelial cell of mammary gland 1
  • Embryo and fetal development 0
    • Ectodermal cell 10
    • Endoderm 14
      • definitive endoderm cells 1
    • Embryoid body 3
    • Inner cell mass 0
    • Mesodermal cell 10
  • Endothelial cells 0
    • Endothelial cell of umbilical vein 3
    • Kidney endothelial cell 1
    • Bone marrow endothelial cell 1
  • Epithelial cell 1
  • Eye 0
    • Retinal sphere cell 1
  • Heart 2
    • Cardiomyocyte 5
  • Hematopoetic cells 2
    • Mature cells 0
      • Granulocyte 5
        • Basophil 1
        • Eosinophil 1
        • Neutrophil 2
      • Erythrocyte (RBC) 1
        • Nucleate erythrocyte 3
      • B-Lymphocyte 6
      • Monocyte 5
      • Myeloid dendritic cell 1
      • Natural killer cells (NK) 2
      • Megakaryocyte 1
      • Macrophage 1
        • lymph node subcapsular sinus macrophage 1
        • lymph node medulla macrophage 1
      • Mast cell 1
      • Mature B cell 2
        • Plasma cell 1
        • Naive B cell 2
        • Memory B cell 1
        • Germinal center B cell 1
      • Plasmacytoid dendritic cell 2
      • Platelet 0
      • T-Lymphocyte 2
        • CD8 2
          • Naive thymus-derived CD8-positive alpha-beta T cell 1
          • Effector memory CD8-positive alpha-beta T cell 1
          • Central memory CD8 positive alpha-beta T cell 1
        • effector T cell 1
        • regulatory T cell 1
        • CD4 2
          • Naive thymus-derived CD4-positive alpha-beta T cell 1
          • Effector memory CD4-positive alpha-beta T cell 1
          • Central memory CD4-positive alpha-beta T cell 1
    • Pluripotent stem cells 0
      • Hematopoietic stem cell (HSC) 30
        • CD34-positive CD38-negative hematopoietic stem cell 1
      • Long-term hematopoietic stem cell (LT-HSC) 12
      • Short-term hematopoietic stem cell (ST-HSC) 7
    • Mononuclear 0
    • Multipotent progenitors 2
      • Hematopoietic multipotent progenitor (MPP) 9
      • Megakaryocyte-erythroid progenitor (MEP) 9
      • Granulocyte macrophage progenitor cell (GMP) 17
      • Common myeloid progenitor (CMP) 10
      • Common lymphocyte progenitor (CLP) 2
    • Blast cells 4
      • Leukemic blast cells 1
    • Bone marrow cells 3
      • Bone marrow stromal cell 2
    • CD34+ cells 0
    • Committed precursors 0
      • PUER Cells 0
      • T-Lymphocyte precursors 0
        • DN1 thymocyte 0
        • DN2 thymocyte 0
        • DN3 thymocyte 0
        • DN4 thymocyte 0
        • Double-positive, alpha-beta thymocyte (DP) 0
      • Megakaryocyte precursors 0
        • Megakaryocyte progenitor (MkP) 1
        • Mk p 0
        • Mk 4p 0
        • Mk 2p 0
      • Granulocyte Precursors 1
        • Promyelocyte 1
        • Myelocyte 1
        • Band cell 1
        • Basophil mast progenitor (BMCP) 0
        • Metamyelocyte 2
        • Monoblast (CFU-M) 1
        • Myeloblast (CFU-G ) 2
        • Mast cell progenitor (MCP) 1
        • Eosinophil progenitor (EoP) 0
        • Basophil progenitor (BAP) 0
        • CFU-GM 0
      • B-Lymphocyte precursors 2
        • Fraction C' precursor B cell (pre-Btr Fr. C') 0
        • Fraction D precursor B cell (pre-B Fr. D) 1
        • Fraction E immature B cell (immature-B Fr. E) 0
        • Fraction C precursor B cell (pro-B Fr. C) 0
        • Fraction B precursor B cell (pro-B Fr. B) 0
        • Fraction A pre-pro B cell (pre-pro B Fr. A) 1
        • Fraction F mature B cell (mature-B Fr. F) 0
      • Erythroid precursor cells 0
        • Proerythroblast 2
          • CD34-negative GlyA-negative proerythroblast 1
          • CD34-positive proerythroblast 2
        • Orthochromatophilic erythroblasts 0
          • CD71-negative GlyA-positive orthochromatic erythroblast 1
        • Late basophlic and polychromatophilic erythroblasts 0
          • CD71-low GlyA-positive polychromatic erythroblast 1
        • Erythroid progenitor cell (BFU-E) 1
          • CD34-positive GlyA-negative erythroid progenitor cell 1
        • Basophilic erythroblast 0
          • GlyA-positive basophillic erythroblast 1
  • Intestinal cells 1
    • Intestinal epithelial cell 3
    • Intestinal villus cell 1
      • differentiated villus cells 1
  • iPSC derived cells 0
    • iPSC-derived midbrain dopamine (mDA) neurons 1
    • motor neurons derived from induced pluripotent stem cells (iPSCs) 1
    • piPSC 1
  • Kidney cells 0
    • Kidney tubule cell 1
    • Kidney interstitial cell 1
    • Glomerular endothelial cell 1
  • Liver 2
    • Fetal liver cell 1
    • Hepatocyte 0
  • Lung 1
  • Muscle & tendon 1
    • Myoblast 5
      • Skeletal muscle myoblast 1
    • Muscle stem cell 4
    • Myotube 1
  • Pancreatic cells 0
    • pancreatic alpha cells 1
    • pancreatic beta cells 1
    • pancreatic progenitors cells 1
  • Skin 0
    • Epidermis progenitor cell 2
    • Telogen (quiescent) bulge stem cell 2
    • Epidermis differentiated cell 2
    • Anagen (activated) bulge stem cell 2
    • Companion layer differentiated cell 2
    • Transient-amplifying matrix cell 2
  • Spleen 2
  • Stem cells 6
    • ESC (embryonic stem cell) 25
    • iPS (induced pluripotent stem cell) 40
  • Tumor cells 2
    • Circulating tumor cell (CTC) 2
    • Primitive neuroectodermal tumor cell 1

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Recently added experiments

Homo sapiens
Richard A. Young | 02/25/2015 - 16:53
Transcription Factor Binding (ChIP-Seq)
Illumina Genome Analyzer II
Human CD133-positive Umbilical Cord Blood (UCB) cells were cross-linked with formaldehyde for 20 min. DNA was enriched by chromatin immunoprecipitation (ChIP) and analyzed by Solexa sequencing. A sample of whole cell extract (WCE) was sequenced and used as the background to determine enrichment. ChIP was performed using an antibody against total TAL1 (Santa Cruz SC-12984), PU.1/SPI1 (Santa Cruz SC-352X), IKAROS (Santa Cruz SC-9859X) and MEIS1 (Abcam ab19867).
Mus musculus
Amit Sinha | 02/11/2015 - 10:31
Transcription Factor Binding (ChIP-Seq)
Illumina HiSeq 2000
Leukemic cells from primary and secondary recipients of MLL-AF9-transduced WT and Ezh2-null cells were sorted for GFP and YFP expression and analyzed by Chip-Seq.
Mus musculus
Ramesh Shivdasani | 02/05/2015 - 16:16
Transcription Factor Binding (ChIP-Seq)
Illumina Genome Analyzer II
We conditionally inactivated mouse Cdx2, a dominant regulator of intestinal development, and mapped its genome occupancy in adult intestinal villi. Although homeotic transformation, observed in Cdx2-null embryos, was absent in mutant adults, gene expression and cell morphology were vitally compromised. Lethality was accelerated in mice lacking both Cdx2 and its homolog Cdx1, with exaggeration of defects in crypt cell replication and enterocyte differentiation. Cdx2 occupancy correlated with...