FastQCFastQC Report
Sat 27 Sep 2014
SRR343302.fastq

Summary

[OK] Basic Statistics

Measure Value
Filename SRR343302.fastq
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 30484953
Filtered Sequences 0
Sequence length 36
%GC 50

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[OK] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 87697 0.2876730693991885 No Hit

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
CCCCC 7874610 6.366184 9.662854 32
TTTTT 2784265 3.55704 3.9229264 25
AAAAA 3188755 3.3118267 4.1482754 2
CTGGG 2750300 3.0727654 3.7901843 1
GGAGG 2643765 3.0617545 3.4017665 3