FastQCFastQC Report
Sat 27 Sep 2014
SRR343300.fastq

Summary

[OK] Basic Statistics

Measure Value
Filename SRR343300.fastq
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 27156989
Filtered Sequences 0
Sequence length 36
%GC 50

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[OK] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 41800 0.1539198620288869 No Hit

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
CCCAG 2736875 3.338252 3.8754663 1
TTTTT 2443265 3.2517674 3.6620932 25
AAAAA 2821570 3.1687284 4.097522 1