FastQCFastQC Report
Sat 27 Sep 2014
SRR343299.fastq

Summary

[OK] Basic Statistics

Measure Value
Filename SRR343299.fastq
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 26985354
Filtered Sequences 0
Sequence length 36
%GC 47

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[OK] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[OK] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 92876 0.34417187930905035 No Hit

[OK] Kmer Content

No overrepresented Kmers