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Cdx2 transcription factor binding in intestinal villus and gene expression profiling in Cdx mutant mice
Measurement Type: 
Transcription Factor Binding (ChIP-Seq)
Immunoprecipitation Antibody
We conditionally inactivated mouse Cdx2, a dominant regulator of intestinal development, and mapped its genome occupancy in adult intestinal villi. Although homeotic transformation, observed in Cdx2-null embryos, was absent in mutant adults, gene expression and cell morphology were vitally compromised. Lethality was accelerated in mice lacking both Cdx2 and its homolog Cdx1, with exaggeration of defects in crypt cell replication and enterocyte differentiation. Cdx2 occupancy correlated with hundreds of transcripts that fell but not with equal numbers that rose with Cdx loss, indicating a predominantly activating role at intestinal cis-regulatory regions. Integrated consideration of a mutant phenotype and cistrome hence reveals the continued and distinct requirement in adults of a master developmental regulator that activates tissue-specific genes. Cdx2 ChIP-seq in mouse villus.


Essential and redundant functions of caudal family proteins in activating adult intestinal genes.
Verzi MP, Shin H, Ho L-L, X Liu S, Shivdasani RA
Mol Cell Biol. 2011 May; 31(10):2026-39. PMID: 21402776. Abstract
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